PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G313100.1
Common NameB456_009G313100, LOC105770944
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 1497aa    MW: 166439 Da    PI: 6.793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G313100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007513851408323
                          ET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirt.H 23  
                          C    C++sF++k++L+ H r+ +
  Gorai.009G313100.1 1385 CDleGCHMSFKTKEELRLHKRNrC 1408
                          77779***************9877 PP

2zf-C2H211.10.001314071430223
                          EET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                          +Cp   Cgk F+++ + + H+r+H
  Gorai.009G313100.1 1407 RCPyeGCGKKFRSHKYAVLHQRVH 1430
                          69999*****************99 PP

3zf-C2H211.40.0009714661492123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          ykC+   Cg sF+  s++ rH r+  H
  Gorai.009G313100.1 1466 YKCKveGCGLSFRFVSDFSRHRRKtgH 1492
                          99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.5E-141555IPR003349JmjN domain
PROSITE profilePS5118313.8831657IPR003349JmjN domain
PfamPF023758.9E-151750IPR003349JmjN domain
SuperFamilySSF511979.34E-27278451No hitNo description
SMARTSM005581.0E-44284453IPR003347JmjC domain
PROSITE profilePS5118433.839284453IPR003347JmjC domain
PfamPF023732.5E-35317436IPR003347JmjC domain
SMARTSM003552213831405IPR015880Zinc finger, C2H2-like
SMARTSM003550.03614061430IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.78E-514061443No hitNo description
PROSITE profilePS5015711.86314061435IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-414071430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014081430IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-914311458IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001614361460IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80314361465IPR007087Zinc finger, C2H2
PROSITE patternPS00028014381460IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-914461488No hitNo description
Gene3DG3DSA:3.30.160.607.5E-1014591489IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2214661492IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.61914661496IPR007087Zinc finger, C2H2
PROSITE patternPS00028014681492IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1497 aa     Download sequence    Send to blast
MGNVEIPKWL KRLPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP PLPKPSKRYV  60
FNNLNRSLSK SPELGSDVNI GSVSNFGDSG GDVRERRAVF TTRHQELGRS GKRMKGVVSS  120
PQCGAQKQVW QSGEIYTLEQ FESKSKTFAK SLLGLLKEVS PLHIEALFWK VASEKSIYVE  180
YANDVPGSGF GEPEGQFRYF HRRRRKRMSY RRENSECRKD EIDAVNNSQM VEINNTSVKS  240
DPDTRVETPK SSTTLSAIAS DVNSHSKRKS GNASNDMEGT AGWKLSNSPW NLQVIARSAG  300
SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW YAVPGDHAFA  360
FEEVIRAEAY GGNIDRLAAL SLLGEKTTLL SPELIVASGI PCCRLIQNPG EFVVTFPRAY  420
HVGFSHGFNC GEAANFGTPQ WLQVAKDAAV RRAAMNYLPM LSHQQLLYLL TMSFMSRVPR  480
SLLPGARSSR LRDRLKEERE VLVKKAFVED LLTENKLLSL LLKRGSTYRA IMWDPLLLPY  540
TSRDSELPSR TATDSTIMQE NVSDIHGEDK SDQKNLLDEM CFYMENLNYL YSNDDDLTCD  600
FQVDSGTLVC VACGILGYPF MSVVQPSEGA AMEFLPVDHL SSQGPTVLVP KNAHSCPIEG  660
SVSDNLNHVL DLSLPSKQAA LPSITKFSDG WDTSNKYLRP RVFCLEHAVQ VEELLQSKGG  720
AKMLVICHSD YQKIKANAIP VADDIGIPFN YNDVPLDAAS EEDLNLINFA IDDEHDEIQE  780
DWTSKLGVNL RYCVKVRKNS SFKQVQHALP LSGLFTDKYS SLELFNIKWQ SRKSRSKGKL  840
NHPSPSKPCE SVEMKVDEIM MEKLDSDISK YGQKIIQYSR RKKRKSDYST GGGGGVELLK  900
NDLPREDSAA SIQFLDKHGG NKSKINARSE SIQAQLEVPT TSVVQRDQNR IVEETGPDDE  960
AQSLIACASS IKKCENKLME RNSENGEISP AEKCSKFCLV ADGEVYLENT ATATKVCNPV  1020
SEQQSDEPTS RYGLINGNSA SSHSAQRCAG RYNQGLEDIT VPKFSINGGA FSGMTSENEV  1080
QQGTEATSRN NSEVIIRSEV PKVPFAAADS CDGTVSQNKA QKQEIQINAR KEVLLSGSFT  1140
SAGIDHQSTD LSVEEYSTIS KNPGAEEDCH TDVALDVEVL QEIQATKGTG GDEVITCSDL  1200
PILEKQPTPV MMEACSEIQQ DSSSSKKLCV GATADADSHE NDPNRYEKNE ESASCCHTPI  1260
NQTTIPIQKY SRAHRETCAT VNVNDGTDVC SSVENGDLES AMVNCKSNAM GRKRKRELEE  1320
TCQKVGSDGF IRSPCEGLRP RAWKDATSSF DADKASSEGL QTKETRKPST HAHRKIIIET  1380
GSHGCDLEGC HMSFKTKEEL RLHKRNRCPY EGCGKKFRSH KYAVLHQRVH DDDRPLKCPW  1440
KGCSMSFKWA WARTEHIRVH TGVRPYKCKV EGCGLSFRFV SDFSRHRRKT GHYIDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A8e-36284435210358Os05g0196500 protein
4igp_A8e-36284435210358Os05g0196500 protein
4igq_A8e-36284435210358Os05g0196500 protein
5fwj_A8e-36286514169390HISTONE DEMETHYLASE JARID1C
5fwj_B8e-36286514169390HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447777.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0D2TY860.0A0A0D2TY86_G
STRINGGLYMA10G35350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]